PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0072.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 342aa    MW: 38600.2 Da    PI: 7.0374
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0072.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.57e-36381302103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k
  Kaladp0042s0072.1.p  38 FLTKTYHLVDDPSTDHVVSWGEDHSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEK 118
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  Kaladp0042s0072.1.p 119 HLLCEIQRRKTS 130
                          *********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.6E-3830122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-5834127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3435127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.7E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALIMENHNN GGSCCNYDDT MNNILLSLDS HKSVPAPFLT KTYHLVDDPS TDHVVSWGED  60
HSTFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN EFFRKGEKHL  120
LCEIQRRKTS QPHVSINHHH HGHQGQYSQQ FGFGPHSYFP YPSRLSISPP DLDENNNINY  180
NGISCHVWGC DTDLSHPKIL SPTTSSMISG GGVGLCEDNE RLRRSNSMLM SELAHMRKLY  240
NDIIYFVQNH VKPVAPSNAY CPLSSPLVTA AARGVGNFND LSNNTSQSSV TVAENDDNDE  300
DENRRMRLFG VPLIRTTLSP SASKKRLHSE LGLNLMPPSP C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-223413017123Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768816e-66AK376881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3143C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074417.11e-120PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-4-like
SwissprotQ9C6351e-107HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A067LCE11e-119A0A067LCE1_JATCU; Uncharacterized protein
STRINGVIT_18s0001g10380.t011e-116(Vitis vinifera)
STRINGPOPTR_0002s12640.11e-116(Populus trichocarpa)
STRINGPOPTR_0014s02700.11e-116(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-99heat shock transcription factor B4